
| Pos | Name | Fahrer | Team | Team | Zeit | Zeit | |
|---|---|---|---|---|---|---|---|
| 1 | N. Antonelli | Niccolò Antonelli | Junior GO&FUN | Junior Team GO&FUN Moto3 | 1:39.183m | 1:39.183m | |
| 2 | J. Miller | Jack Miller | RB KTM Ajo | Red Bull KTM Ajo | 1:39.251m | +0.068s | |
| 3 | Á. Márquez | Álex Márquez | Estrella Gal. | Estrella Galicia 0'0 | 1:39.556m | +0.373s | |
| 4 | I. Viñales | Isaac Viñales | Team Calvo | Team Calvo | 1:39.637m | +0.454s | |
| 5 | Á. Rins | Álex Rins | Estrella Gal. | Estrella Galicia 0'0 | 1:39.716m | +0.533s | |
| 6 | K. Hanika | Karel Hanika | RB KTM Ajo | Red Bull KTM Ajo | 1:39.731m | +0.548s | |
| 7 | N. Ajo | Niklas Ajo | Avant Tecno | Avant Tecno | 1:39.750m | +0.567s | |
| 8 | J. McPhee | John McPhee | Peugeot MC Saxo | Peugeot MC Saxoprint | 1:39.775m | +0.592s | |
| 9 | E. Vázquez | Efrén Vázquez | Peugeot MC Saxo | Peugeot MC Saxoprint | 1:39.869m | +0.686s | |
| 10 | J. Guevara | Juanfran Guevara | Aspar Team | CFMOTO Aspar Team | 1:39.884m | +0.701s | |
| 11 | D. Kent | Danny Kent | RB Husqvarna | Red Bull Husqvarna Ajo | 1:39.923m | +0.740s | |
| 12 | J. Kornfeil | Jakub Kornfeil | Team Calvo | Team Calvo | 1:39.969m | +0.786s | |
| 13 | A. Migno | Andrea Migno | Mahindra Racing | Mahindra Racing | 1:40.018m | +0.835s | |
| 14 | R. Fenati | Romano Fenati | Sky Racing Team | Sky Racing Team VR46 | 1:40.022m | +0.839s | |
| 15 | A. Masbou | Alexis Masbou | Snipers Team | Rivacold Snipers Team | 1:40.038m | +0.855s | |
| 16 | B. Binder | Brad Binder | Ambrogio Racing | Ambrogio Racing | 1:40.045m | +0.862s | |
| 17 | M. Oliveira | Miguel Oliveira | Mahindra Racing | Mahindra Racing | 1:40.053m | +0.870s | |
| 18 | J. Navarro | Jorge Navarro | Marc VDS Racing | Marc VDS Racing Team | 1:40.097m | +0.914s | |
| 19 | A. Tonucci | Alessandro Tonucci | CIP-Green | CIP Green Power | 1:40.334m | +1.151s | |
| 20 | F. Bagnaia | Francesco Bagnaia | Sky Racing Team | Sky Racing Team VR46 | 1:40.379m | +1.196s | |
| 21 | E. Bastianini | Enea Bastianini | Junior GO&FUN | Junior Team GO&FUN Moto3 | 1:40.412m | +1.229s | |
| 22 | A. Arenas | Albert Arenas | Team Calvo | Team Calvo | 1:40.447m | +1.264s | |
| 23 | J. Iwema | Jasper Iwema | CIP-Green | CIP Green Power | 1:40.780m | +1.597s | |
| 24 | H. Azmi | Hafiq Azmi | SIC-AJO | SIC-AJO | 1:40.875m | +1.692s | |
| 25 | G. Rodrigo | Gabriel Rodrigo | BOE Owlride | BOE Owlride | 1:40.950m | +1.767s | |
| 26 | Z. Khairuddin | Zulfahmi Khairuddin | Ongnetta-AirA | Ongnetta-AirAsia | 1:41.040m | +1.857s | |
| 27 | M. Ferrari | Matteo Ferrari | San Carlo Team | San Carlo Team Italia | 1:41.051m | +1.868s | |
| 28 | L. Grünwald | Luca Grünwald | Kiefer Racing | Kiefer Racing | 1:41.137m | +1.954s | |
| 29 | J. Danilo | Jules Danilo | Ambrogio Racing | Ambrogio Racing | 1:41.336m | +2.153s | |
| 30 | A. Locatelli | Andrea Locatelli | San Carlo Team | San Carlo Team Italia | 1:41.378m | +2.195s | |
| 31 | M. Herrera | Maria Herrera | Jun. Estrella | Junior Team Estrella Galicia | 1:41.474m | +2.291s | |
| 32 | P. Öttl | Philipp Öttl | Interwetten Pad | Interwetten Paddock Moto3 | 1:41.671m | +2.488s | |
| 33 | S. Deroue | Scott Deroue | RW Racing GP | RW Racing GP | 1:41.701m | +2.518s | |
| 34 | G. Ramos | Gabriel Ramos | Kiefer Racing | Kiefer Racing | 1:42.209m | +3.026s |
| Aragon GP | 26.09. - 28.09. | |
| Japan GP | 10.10. - 12.10. | |
| Phillip Island | 17.10. - 19.10. | |
| Sepang | 24.10. - 26.10. | |
| Valencia | 07.11. - 09.11. |