
| Pos | Name | Fahrer | Team | Team | Zeit | Zeit | |
|---|---|---|---|---|---|---|---|
| 1 | L. Salom | Luis Salom | RB KTM Ajo | Red Bull KTM Ajo | 1:39.879m | 1:39.879m | |
| 2 | M. Viñales | Maverick Viñales | Team Calvo | Team Calvo | 1:39.954m | +0.075s | |
| 3 | J. Miller | Jack Miller | Caretta RTG | Caretta Technology - RTG | 1:39.963m | +0.084s | |
| 4 | Á. Rins | Álex Rins | Estrella Gal. | Estrella Galicia 0'0 | 1:40.222m | +0.343s | |
| 5 | J. Folger | Jonas Folger | Aspar Team | CFMOTO Aspar Team | 1:40.251m | +0.372s | |
| 6 | N. Antonelli | Niccolò Antonelli | GO&FUN Gresini | GO&FUN Gresini Moto3 | 1:40.480m | +0.601s | |
| 7 | Á. Márquez | Álex Márquez | Estrella Gal. | Estrella Galicia 0'0 | 1:40.662m | +0.783s | |
| 8 | P. Öttl | Philipp Öttl | Paddock Motion | Paddock TT Motion | 1:40.694m | +0.815s | |
| 9 | J. McPhee | John McPhee | Caretta RTG | Caretta Technology - RTG | 1:40.924m | +1.045s | |
| 10 | M. Oliveira | Miguel Oliveira | Mahindra Racing | Mahindra Racing | 1:40.927m | +1.048s | |
| 11 | E. Vázquez | Efrén Vázquez | Mahindra Racing | Mahindra Racing | 1:41.000m | +1.121s | |
| 12 | N. Ajo | Niklas Ajo | Avant Tecno | Avant Tecno | 1:41.045m | +1.166s | |
| 13 | A. Sissis | Arthur Sissis | RB KTM Ajo | Red Bull KTM Ajo | 1:41.090m | +1.211s | |
| 14 | A. Masbou | Alexis Masbou | Ongetta-Ricavol | Ongetta-Ricavold | 1:41.112m | +1.233s | |
| 15 | A. Carrasco | Ana Carrasco | Team Calvo | Team Calvo | 1:41.183m | +1.304s | |
| 16 | F. Bagnaia | Francesco Bagnaia | San Carlo Team | San Carlo Team Italia | 1:41.236m | +1.357s | |
| 17 | Z. Khairuddin | Zulfahmi Khairuddin | RB KTM Ajo | Red Bull KTM Ajo | 1:41.268m | +1.389s | |
| 18 | B. Binder | Brad Binder | Ambrogio Racing | Ambrogio Racing | 1:41.270m | +1.391s | |
| 19 | J. Iwema | Jasper Iwema | RW Racing GP | RW Racing GP | 1:41.296m | +1.417s | |
| 20 | M. Ferrari | Matteo Ferrari | Ongetta-Centro | Ongetta-Centro Seta | 1:41.320m | +1.441s | |
| 21 | I. Viñales | Isaac Viñales | B-O-C Seta | Bimbo-Ongetta-Centro Seta | 1:41.376m | +1.497s | |
| 22 | H. Watanabe | Hyuga Watanabe | LF Tascaracing | La Fonte Tascaracing | 1:41.378m | +1.499s | |
| 23 | L. Loi | Livio Loi | Marc VDS Racing | Marc VDS Racing Team | 1:41.391m | +1.512s | |
| 24 | J. Kornfeil | Jakub Kornfeil | Redox RW | Redox RW Racing GP | 1:41.399m | +1.520s | |
| 25 | R. Fenati | Romano Fenati | San Carlo Team | San Carlo Team Italia | 1:41.472m | +1.593s | |
| 26 | L. Baldassarri | Lorenzo Baldassarri | GO&FUN Gresini | GO&FUN Gresini Moto3 | 1:41.658m | +1.779s | |
| 27 | E. Granado | Eric Granado | Aspar Team | CFMOTO Aspar Team | 1:41.943m | +2.064s | |
| 28 | J. Guevara | Juanfran Guevara | CIP-Green | CIP Green Power | 1:42.148m | +2.269s | |
| 29 | F. Alt | Florian Alt | Kiefer Racing | Kiefer Racing | 1:42.238m | +2.359s | |
| 30 | T. Finsterbusch | Toni Finsterbusch | Kiefer Racing | Kiefer Racing | 1:42.414m | +2.535s | |
| 31 | LF Tascaracing | La Fonte Tascaracing | 1:42.557m | +2.678s | |||
| 32 | Ambrogio Racing | Ambrogio Racing | 1:42.891m | +3.012s | |||
| 33 | J. Navarro | Jorge Navarro | Cuna de Camp. | Cuna de Campeones | 1:42.940m | +3.061s | |
| 34 | A. Techer | Alan Techer | CIP-Green | CIP Green Power | DNF | DNF |
| Aragon GP | 27.09. - 29.09. | |
| Sepang | 11.10. - 13.10. | |
| Phillip Island | 18.10. - 20.10. | |
| Japan GP | 25.10. - 27.10. | |
| Valencia | 08.11. - 10.11. |