
| Pos | Name | Fahrer | Team | Team | Zeit | Zeit | |
|---|---|---|---|---|---|---|---|
| 1 | Á. Rins | Álex Rins | Estrella Gal. | Estrella Galicia 0'0 | 1:47.392m | 1:47.392m | |
| 2 | Á. Márquez | Álex Márquez | Estrella Gal. | Estrella Galicia 0'0 | 1:47.686m | +0.294s | |
| 3 | M. Viñales | Maverick Viñales | Team Calvo | Team Calvo | 1:47.869m | +0.477s | |
| 4 | E. Vázquez | Efrén Vázquez | Mahindra Racing | Mahindra Racing | 1:47.905m | +0.513s | |
| 5 | J. Miller | Jack Miller | Caretta RTG | Caretta Technology - RTG | 1:47.928m | +0.536s | |
| 6 | A. Sissis | Arthur Sissis | RB KTM Ajo | Red Bull KTM Ajo | 1:48.095m | +0.703s | |
| 7 | J. Folger | Jonas Folger | Aspar Team | CFMOTO Aspar Team | 1:48.149m | +0.757s | |
| 8 | M. Oliveira | Miguel Oliveira | Mahindra Racing | Mahindra Racing | 1:48.217m | +0.825s | |
| 10 | L. Salom | Luis Salom | RB KTM Ajo | Red Bull KTM Ajo | 1:48.376m | +0.984s | |
| 11 | L. Loi | Livio Loi | Marc VDS Racing | Marc VDS Racing Team | 1:48.639m | +1.247s | |
| 12 | A. Tonucci | Alessandro Tonucci | LF Tascaracing | La Fonte Tascaracing | 1:48.879m | +1.487s | |
| 13 | N. Antonelli | Niccolò Antonelli | GO&FUN Gresini | GO&FUN Gresini Moto3 | 1:48.900m | +1.508s | |
| 14 | I. Viñales | Isaac Viñales | B-O-C Seta | Bimbo-Ongetta-Centro Seta | 1:48.907m | +1.515s | |
| 15 | R. Fenati | Romano Fenati | San Carlo Team | San Carlo Team Italia | 1:48.927m | +1.535s | |
| 16 | J. Kornfeil | Jakub Kornfeil | Redox RW | Redox RW Racing GP | 1:48.936m | +1.544s | |
| 17 | A. Techer | Alan Techer | CIP-Green | CIP Green Power | 1:48.975m | +1.583s | |
| 18 | E. Granado | Eric Granado | Aspar Team | CFMOTO Aspar Team | 1:49.223m | +1.831s | |
| 19 | B. Binder | Brad Binder | Ambrogio Racing | Ambrogio Racing | 1:49.312m | +1.920s | |
| 20 | A. Masbou | Alexis Masbou | Ongetta-Ricavol | Ongetta-Ricavold | 1:49.372m | +1.980s | |
| 21 | J. Guevara | Juanfran Guevara | CIP-Green | CIP Green Power | 1:49.423m | +2.031s | |
| 22 | M. Ferrari | Matteo Ferrari | Ongetta-Centro | Ongetta-Centro Seta | 1:49.438m | +2.046s | |
| 23 | L. Baldassarri | Lorenzo Baldassarri | GO&FUN Gresini | GO&FUN Gresini Moto3 | 1:49.447m | +2.055s | |
| 24 | N. Ajo | Niklas Ajo | Avant Tecno | Avant Tecno | 1:49.606m | +2.214s | |
| 25 | F. Alt | Florian Alt | Kiefer Racing | Kiefer Racing | 1:49.626m | +2.234s | |
| 26 | P. Öttl | Philipp Öttl | Paddock Motion | Paddock TT Motion | 1:49.668m | +2.276s | |
| 27 | J. Iwema | Jasper Iwema | RW Racing GP | RW Racing GP | 1:49.773m | +2.381s | |
| 28 | T. Finsterbusch | Toni Finsterbusch | Kiefer Racing | Kiefer Racing | 1:50.058m | +2.666s | |
| 29 | H. Watanabe | Hyuga Watanabe | LF Tascaracing | La Fonte Tascaracing | 1:50.287m | +2.895s | |
| 30 | J. McPhee | John McPhee | Caretta RTG | Caretta Technology - RTG | 1:50.289m | +2.897s | |
| 31 | A. Carrasco | Ana Carrasco | Team Calvo | Team Calvo | 1:50.316m | +2.924s | |
| 32 | F. Bagnaia | Francesco Bagnaia | San Carlo Team | San Carlo Team Italia | 1:50.338m | +2.946s | |
| 33 | J. Danilo | Jules Danilo | Ambrogio Racing | Ambrogio Racing | 1:50.933m | +3.541s |
| Aragon GP | 27.09. - 29.09. | |
| Sepang | 11.10. - 13.10. | |
| Phillip Island | 18.10. - 20.10. | |
| Japan GP | 25.10. - 27.10. | |
| Valencia | 08.11. - 10.11. |