
| Pos | Name | Fahrer | Team | Team | Zeit | Zeit | |
|---|---|---|---|---|---|---|---|
| 1 | J. Folger | Jonas Folger | Aspar Team | CFMOTO Aspar Team | 1:50.379m | 1:50.379m | |
| 2 | I. Viñales | Isaac Viñales | B-O-C Seta | Bimbo-Ongetta-Centro Seta | 1:50.825m | +0.446s | |
| 3 | Á. Rins | Álex Rins | Estrella Gal. | Estrella Galicia 0'0 | 1:51.250m | +0.871s | |
| 4 | M. Viñales | Maverick Viñales | Team Calvo | Team Calvo | 1:51.423m | +1.044s | |
| 5 | A. Techer | Alan Techer | CIP-Green | CIP Green Power | 1:51.579m | +1.200s | |
| 6 | J. Miller | Jack Miller | Caretta RTG | Caretta Technology - RTG | 1:51.637m | +1.258s | |
| 7 | N. Antonelli | Niccolò Antonelli | GO&FUN Gresini | GO&FUN Gresini Moto3 | 1:51.714m | +1.335s | |
| 8 | Á. Márquez | Álex Márquez | Estrella Gal. | Estrella Galicia 0'0 | 1:52.040m | +1.661s | |
| 9 | E. Vázquez | Efrén Vázquez | Mahindra Racing | Mahindra Racing | 1:52.223m | +1.844s | |
| 10 | A. Sissis | Arthur Sissis | RB KTM Ajo | Red Bull KTM Ajo | 1:52.370m | +1.991s | |
| 11 | E. Granado | Eric Granado | Aspar Team | CFMOTO Aspar Team | 1:52.442m | +2.063s | |
| 13 | R. Fenati | Romano Fenati | San Carlo Team | San Carlo Team Italia | 1:52.571m | +2.192s | |
| 14 | A. Tonucci | Alessandro Tonucci | LF Tascaracing | La Fonte Tascaracing | 1:52.577m | +2.198s | |
| 15 | L. Salom | Luis Salom | RB KTM Ajo | Red Bull KTM Ajo | 1:52.662m | +2.283s | |
| 16 | N. Ajo | Niklas Ajo | Avant Tecno | Avant Tecno | 1:52.734m | +2.355s | |
| 17 | B. Binder | Brad Binder | Ambrogio Racing | Ambrogio Racing | 1:52.744m | +2.365s | |
| 18 | J. Iwema | Jasper Iwema | RW Racing GP | RW Racing GP | 1:53.557m | +3.178s | |
| 19 | M. Oliveira | Miguel Oliveira | Mahindra Racing | Mahindra Racing | 1:53.617m | +3.238s | |
| 20 | J. Kornfeil | Jakub Kornfeil | Redox RW | Redox RW Racing GP | 1:53.964m | +3.585s | |
| 21 | A. Masbou | Alexis Masbou | Ongetta-Ricavol | Ongetta-Ricavold | 1:54.212m | +3.833s | |
| 22 | T. Finsterbusch | Toni Finsterbusch | Kiefer Racing | Kiefer Racing | 1:54.240m | +3.861s | |
| 23 | M. Ferrari | Matteo Ferrari | Ongetta-Centro | Ongetta-Centro Seta | 1:54.509m | +4.130s | |
| 24 | L. Loi | Livio Loi | Marc VDS Racing | Marc VDS Racing Team | 1:54.531m | +4.152s | |
| 25 | J. McPhee | John McPhee | Caretta RTG | Caretta Technology - RTG | 1:54.726m | +4.347s | |
| 26 | L. Baldassarri | Lorenzo Baldassarri | GO&FUN Gresini | GO&FUN Gresini Moto3 | 1:54.933m | +4.554s | |
| 27 | F. Bagnaia | Francesco Bagnaia | San Carlo Team | San Carlo Team Italia | 1:54.983m | +4.604s | |
| 28 | H. Watanabe | Hyuga Watanabe | LF Tascaracing | La Fonte Tascaracing | 1:55.026m | +4.647s | |
| 29 | F. Alt | Florian Alt | Kiefer Racing | Kiefer Racing | 1:55.536m | +5.157s | |
| 30 | J. Guevara | Juanfran Guevara | CIP-Green | CIP Green Power | 1:56.629m | +6.250s | |
| 31 | P. Öttl | Philipp Öttl | Paddock Motion | Paddock TT Motion | 1:57.748m | +7.369s | |
| 32 | J. Danilo | Jules Danilo | Ambrogio Racing | Ambrogio Racing | DNF | DNF | |
| 33 | A. Carrasco | Ana Carrasco | Team Calvo | Team Calvo | DNF | DNF |
| Aragon GP | 27.09. - 29.09. | |
| Sepang | 11.10. - 13.10. | |
| Phillip Island | 18.10. - 20.10. | |
| Japan GP | 25.10. - 27.10. | |
| Valencia | 08.11. - 10.11. |