
| Pos | Name | Fahrer | Team | Team | Zeit | Zeit | |
|---|---|---|---|---|---|---|---|
| 1 | Á. Rins | Álex Rins | Estrella Gal. | Estrella Galicia 0'0 | 1:42.917m | 1:42.917m | |
| 2 | J. Folger | Jonas Folger | Aspar Team | CFMOTO Aspar Team | 1:43.111m | +0.194s | |
| 3 | M. Viñales | Maverick Viñales | Team Calvo | Team Calvo | 1:43.503m | +0.586s | |
| 4 | J. Miller | Jack Miller | Caretta RTG | Caretta Technology - RTG | 1:43.703m | +0.786s | |
| 5 | Á. Márquez | Álex Márquez | Estrella Gal. | Estrella Galicia 0'0 | 1:43.886m | +0.969s | |
| 6 | R. Fenati | Romano Fenati | San Carlo Team | San Carlo Team Italia | 1:43.961m | +1.044s | |
| 7 | A. Sissis | Arthur Sissis | RB KTM Ajo | Red Bull KTM Ajo | 1:43.967m | +1.050s | |
| 8 | M. Oliveira | Miguel Oliveira | Mahindra Racing | Mahindra Racing | 1:43.977m | +1.060s | |
| 9 | I. Viñales | Isaac Viñales | B-O-C Seta | Bimbo-Ongetta-Centro Seta | 1:44.045m | +1.128s | |
| 10 | B. Binder | Brad Binder | Ambrogio Racing | Ambrogio Racing | 1:44.128m | +1.211s | |
| 11 | J. Kornfeil | Jakub Kornfeil | Redox RW | Redox RW Racing GP | 1:44.200m | +1.283s | |
| 12 | E. Vázquez | Efrén Vázquez | Mahindra Racing | Mahindra Racing | 1:44.207m | +1.290s | |
| 13 | Z. Khairuddin | Zulfahmi Khairuddin | RB KTM Ajo | Red Bull KTM Ajo | 1:44.316m | +1.399s | |
| 14 | N. Antonelli | Niccolò Antonelli | GO&FUN Gresini | GO&FUN Gresini Moto3 | 1:44.320m | +1.403s | |
| 15 | P. Öttl | Philipp Öttl | Paddock Motion | Paddock TT Motion | 1:44.359m | +1.442s | |
| 16 | L. Salom | Luis Salom | RB KTM Ajo | Red Bull KTM Ajo | 1:44.515m | +1.598s | |
| 17 | A. Masbou | Alexis Masbou | Ongetta-Ricavol | Ongetta-Ricavold | 1:44.549m | +1.632s | |
| 18 | J. McPhee | John McPhee | Caretta RTG | Caretta Technology - RTG | 1:44.554m | +1.637s | |
| 19 | L. Baldassarri | Lorenzo Baldassarri | GO&FUN Gresini | GO&FUN Gresini Moto3 | 1:44.650m | +1.733s | |
| 20 | A. Locatelli | Andrea Locatelli | Mahindra Racing | Mahindra Racing | 1:44.851m | +1.934s | |
| 21 | M. Ferrari | Matteo Ferrari | Ongetta-Centro | Ongetta-Centro Seta | 1:44.884m | +1.967s | |
| 22 | E. Granado | Eric Granado | Aspar Team | CFMOTO Aspar Team | 1:44.949m | +2.032s | |
| 23 | A. Techer | Alan Techer | CIP-Green | CIP Green Power | 1:45.042m | +2.125s | |
| 24 | A. Tonucci | Alessandro Tonucci | LF Tascaracing | La Fonte Tascaracing | 1:45.303m | +2.386s | |
| 25 | T. Finsterbusch | Toni Finsterbusch | Kiefer Racing | Kiefer Racing | 1:45.351m | +2.434s | |
| 26 | A. Carrasco | Ana Carrasco | Team Calvo | Team Calvo | 1:45.455m | +2.538s | |
| 27 | Ambrogio Racing | Ambrogio Racing | 1:45.607m | +2.690s | |||
| 28 | L. Marini | Luca Marini | Twelve Racing | Twelve Racing | 1:45.678m | +2.761s | |
| 29 | L. Loi | Livio Loi | Marc VDS Racing | Marc VDS Racing Team | 1:45.901m | +2.984s | |
| 30 | J. Iwema | Jasper Iwema | RW Racing GP | RW Racing GP | 1:45.904m | +2.987s | |
| 31 | J. Guevara | Juanfran Guevara | CIP-Green | CIP Green Power | 1:46.009m | +3.092s | |
| 32 | N. Ajo | Niklas Ajo | Avant Tecno | Avant Tecno | 1:46.059m | +3.142s | |
| 33 | H. Watanabe | Hyuga Watanabe | LF Tascaracing | La Fonte Tascaracing | 1:46.219m | +3.302s | |
| 34 | F. Alt | Florian Alt | Kiefer Racing | Kiefer Racing | 1:46.255m | +3.338s | |
| 35 | F. Bagnaia | Francesco Bagnaia | San Carlo Team | San Carlo Team Italia | 1:46.417m | +3.500s |
| Aragon GP | 27.09. - 29.09. | |
| Sepang | 11.10. - 13.10. | |
| Phillip Island | 18.10. - 20.10. | |
| Japan GP | 25.10. - 27.10. | |
| Valencia | 08.11. - 10.11. |