
| Pos | Name | Fahrer | Team | Team | Zeit | Zeit | |
|---|---|---|---|---|---|---|---|
| 1 | Á. Rins | Álex Rins | Estrella Gal. | Estrella Galicia 0'0 | 1:43.457m | 1:43.457m | |
| 2 | M. Viñales | Maverick Viñales | Team Calvo | Team Calvo | 1:43.740m | +0.283s | |
| 3 | Á. Márquez | Álex Márquez | Estrella Gal. | Estrella Galicia 0'0 | 1:43.826m | +0.369s | |
| 4 | J. Folger | Jonas Folger | Aspar Team | CFMOTO Aspar Team | 1:44.223m | +0.766s | |
| 5 | B. Binder | Brad Binder | Ambrogio Racing | Ambrogio Racing | 1:44.263m | +0.806s | |
| 6 | L. Salom | Luis Salom | RB KTM Ajo | Red Bull KTM Ajo | 1:44.389m | +0.932s | |
| 7 | I. Viñales | Isaac Viñales | B-O-C Seta | Bimbo-Ongetta-Centro Seta | 1:44.403m | +0.946s | |
| 8 | J. Miller | Jack Miller | Caretta RTG | Caretta Technology - RTG | 1:44.441m | +0.984s | |
| 9 | N. Antonelli | Niccolò Antonelli | GO&FUN Gresini | GO&FUN Gresini Moto3 | 1:44.527m | +1.070s | |
| 10 | M. Oliveira | Miguel Oliveira | Mahindra Racing | Mahindra Racing | 1:44.558m | +1.101s | |
| 11 | P. Öttl | Philipp Öttl | Paddock Motion | Paddock TT Motion | 1:44.819m | +1.362s | |
| 12 | E. Granado | Eric Granado | Aspar Team | CFMOTO Aspar Team | 1:44.856m | +1.399s | |
| 13 | Z. Khairuddin | Zulfahmi Khairuddin | RB KTM Ajo | Red Bull KTM Ajo | 1:44.856m | +1.399s | |
| 14 | A. Tonucci | Alessandro Tonucci | LF Tascaracing | La Fonte Tascaracing | 1:44.870m | +1.413s | |
| 15 | M. Ferrari | Matteo Ferrari | Ongetta-Centro | Ongetta-Centro Seta | 1:44.946m | +1.489s | |
| 16 | A. Sissis | Arthur Sissis | RB KTM Ajo | Red Bull KTM Ajo | 1:44.954m | +1.497s | |
| 17 | J. Kornfeil | Jakub Kornfeil | Redox RW | Redox RW Racing GP | 1:44.972m | +1.515s | |
| 18 | N. Ajo | Niklas Ajo | Avant Tecno | Avant Tecno | 1:45.068m | +1.611s | |
| 19 | E. Vázquez | Efrén Vázquez | Mahindra Racing | Mahindra Racing | 1:45.218m | +1.761s | |
| 20 | A. Locatelli | Andrea Locatelli | Mahindra Racing | Mahindra Racing | 1:45.254m | +1.797s | |
| 21 | A. Techer | Alan Techer | CIP-Green | CIP Green Power | 1:45.280m | +1.823s | |
| 22 | J. McPhee | John McPhee | Caretta RTG | Caretta Technology - RTG | 1:45.322m | +1.865s | |
| 23 | R. Fenati | Romano Fenati | San Carlo Team | San Carlo Team Italia | 1:45.349m | +1.892s | |
| 24 | A. Carrasco | Ana Carrasco | Team Calvo | Team Calvo | 1:45.363m | +1.906s | |
| 25 | L. Loi | Livio Loi | Marc VDS Racing | Marc VDS Racing Team | 1:45.489m | +2.032s | |
| 26 | L. Baldassarri | Lorenzo Baldassarri | GO&FUN Gresini | GO&FUN Gresini Moto3 | 1:45.554m | +2.097s | |
| 27 | Ambrogio Racing | Ambrogio Racing | 1:45.750m | +2.293s | |||
| 28 | L. Marini | Luca Marini | Twelve Racing | Twelve Racing | 1:45.767m | +2.310s | |
| 29 | J. Iwema | Jasper Iwema | RW Racing GP | RW Racing GP | 1:45.769m | +2.312s | |
| 30 | A. Masbou | Alexis Masbou | Ongetta-Ricavol | Ongetta-Ricavold | 1:45.816m | +2.359s | |
| 31 | F. Bagnaia | Francesco Bagnaia | San Carlo Team | San Carlo Team Italia | 1:46.033m | +2.576s | |
| 32 | T. Finsterbusch | Toni Finsterbusch | Kiefer Racing | Kiefer Racing | 1:46.144m | +2.687s | |
| 33 | F. Alt | Florian Alt | Kiefer Racing | Kiefer Racing | 1:46.242m | +2.785s | |
| 34 | H. Watanabe | Hyuga Watanabe | LF Tascaracing | La Fonte Tascaracing | 1:46.576m | +3.119s | |
| 35 | J. Guevara | Juanfran Guevara | CIP-Green | CIP Green Power | 1:47.631m | +4.174s |
| Aragon GP | 27.09. - 29.09. | |
| Sepang | 11.10. - 13.10. | |
| Phillip Island | 18.10. - 20.10. | |
| Japan GP | 25.10. - 27.10. | |
| Valencia | 08.11. - 10.11. |