
| Pos | Name | Fahrer | Team | Team | Zeit | Zeit | |
|---|---|---|---|---|---|---|---|
| 1 | M. Oliveira | Miguel Oliveira | Mahindra Racing | Mahindra Racing | 1:43.588m | 1:43.588m | |
| 2 | Á. Márquez | Álex Márquez | Estrella Gal. | Estrella Galicia 0'0 | 1:43.588m | 1:43.588m | |
| 3 | M. Viñales | Maverick Viñales | Team Calvo | Team Calvo | 1:43.649m | +0.061s | |
| 4 | L. Salom | Luis Salom | RB KTM Ajo | Red Bull KTM Ajo | 1:43.671m | +0.083s | |
| 5 | Á. Rins | Álex Rins | Estrella Gal. | Estrella Galicia 0'0 | 1:43.673m | +0.085s | |
| 6 | J. Folger | Jonas Folger | Aspar Team | CFMOTO Aspar Team | 1:43.901m | +0.313s | |
| 7 | N. Ajo | Niklas Ajo | Avant Tecno | Avant Tecno | 1:44.330m | +0.742s | |
| 8 | I. Viñales | Isaac Viñales | B-O-C Seta | Bimbo-Ongetta-Centro Seta | 1:44.424m | +0.836s | |
| 9 | A. Sissis | Arthur Sissis | RB KTM Ajo | Red Bull KTM Ajo | 1:44.470m | +0.882s | |
| 10 | N. Antonelli | Niccolò Antonelli | GO&FUN Gresini | GO&FUN Gresini Moto3 | 1:44.769m | +1.181s | |
| 11 | J. Iwema | Jasper Iwema | RW Racing GP | RW Racing GP | 1:44.812m | +1.224s | |
| 12 | A. Masbou | Alexis Masbou | Ongetta-Ricavol | Ongetta-Ricavold | 1:44.814m | +1.226s | |
| 13 | A. Techer | Alan Techer | CIP-Green | CIP Green Power | 1:44.846m | +1.258s | |
| 14 | J. Miller | Jack Miller | Caretta RTG | Caretta Technology - RTG | 1:44.917m | +1.329s | |
| 15 | L. Baldassarri | Lorenzo Baldassarri | GO&FUN Gresini | GO&FUN Gresini Moto3 | 1:44.931m | +1.343s | |
| 16 | L. Loi | Livio Loi | Marc VDS Racing | Marc VDS Racing Team | 1:44.942m | +1.354s | |
| 17 | E. Vázquez | Efrén Vázquez | Mahindra Racing | Mahindra Racing | 1:44.950m | +1.362s | |
| 18 | J. Kornfeil | Jakub Kornfeil | Redox RW | Redox RW Racing GP | 1:45.093m | +1.505s | |
| 19 | F. Bagnaia | Francesco Bagnaia | San Carlo Team | San Carlo Team Italia | 1:45.117m | +1.529s | |
| 20 | B. Schouten | Bryan Schouten | Dutch Racing | Dutch Racing Team | 1:45.186m | +1.598s | |
| 21 | B. Binder | Brad Binder | Ambrogio Racing | Ambrogio Racing | 1:45.202m | +1.614s | |
| 22 | R. Fenati | Romano Fenati | San Carlo Team | San Carlo Team Italia | 1:45.235m | +1.647s | |
| 23 | A. Tonucci | Alessandro Tonucci | LF Tascaracing | La Fonte Tascaracing | 1:45.278m | +1.690s | |
| 24 | J. McPhee | John McPhee | Caretta RTG | Caretta Technology - RTG | 1:45.303m | +1.715s | |
| 25 | P. Öttl | Philipp Öttl | Paddock Motion | Paddock TT Motion | 1:45.526m | +1.938s | |
| 26 | T. Finsterbusch | Toni Finsterbusch | Kiefer Racing | Kiefer Racing | 1:45.553m | +1.965s | |
| 27 | E. Granado | Eric Granado | Aspar Team | CFMOTO Aspar Team | 1:45.626m | +2.038s | |
| 28 | H. Watanabe | Hyuga Watanabe | LF Tascaracing | La Fonte Tascaracing | 1:45.679m | +2.091s | |
| 29 | D. Webb | Daniel Webb | Ambrogio Racing | Ambrogio Racing | 1:45.795m | +2.207s | |
| 30 | A. Carrasco | Ana Carrasco | Team Calvo | Team Calvo | 1:45.856m | +2.268s | |
| 31 | M. Ferrari | Matteo Ferrari | Ongetta-Centro | Ongetta-Centro Seta | 1:46.125m | +2.537s | |
| 32 | J. Guevara | Juanfran Guevara | CIP-Green | CIP Green Power | 1:46.247m | +2.659s | |
| 33 | T. van Leeuwen | Thomas van Leeuwen | RT v. Leeuwen | Racing Team van Leeuwen | 1:46.292m | +2.704s | |
| 34 | F. Alt | Florian Alt | Kiefer Racing | Kiefer Racing | 1:46.897m | +3.309s | |
| 35 | Z. Khairuddin | Zulfahmi Khairuddin | RB KTM Ajo | Red Bull KTM Ajo | DNF | DNF |
| Aragon GP | 27.09. - 29.09. | |
| Sepang | 11.10. - 13.10. | |
| Phillip Island | 18.10. - 20.10. | |
| Japan GP | 25.10. - 27.10. | |
| Valencia | 08.11. - 10.11. |