
| Pos | Name | Fahrer | Team | Team | Zeit | Zeit | |
|---|---|---|---|---|---|---|---|
| 1 | M. Viñales | Maverick Viñales | Team Calvo | Team Calvo | 1:58.703m | 1:58.703m | |
| 2 | J. Folger | Jonas Folger | Aspar Team | CFMOTO Aspar Team | 1:58.816m | +0.113s | |
| 3 | M. Oliveira | Miguel Oliveira | Mahindra Racing | Mahindra Racing | 1:58.850m | +0.147s | |
| 4 | J. Miller | Jack Miller | Caretta RTG | Caretta Technology - RTG | 1:59.236m | +0.533s | |
| 5 | L. Salom | Luis Salom | RB KTM Ajo | Red Bull KTM Ajo | 1:59.353m | +0.650s | |
| 6 | Á. Rins | Álex Rins | Estrella Gal. | Estrella Galicia 0'0 | 1:59.846m | +1.143s | |
| 7 | J. McPhee | John McPhee | Caretta RTG | Caretta Technology - RTG | 1:59.874m | +1.171s | |
| 8 | D. Webb | Daniel Webb | Ambrogio Racing | Ambrogio Racing | 2:00.001m | +1.298s | |
| 9 | B. Binder | Brad Binder | Ambrogio Racing | Ambrogio Racing | 2:00.125m | +1.422s | |
| 10 | N. Ajo | Niklas Ajo | Avant Tecno | Avant Tecno | 2:00.190m | +1.487s | |
| 11 | I. Viñales | Isaac Viñales | B-O-C Seta | Bimbo-Ongetta-Centro Seta | 2:00.229m | +1.526s | |
| 13 | A. Masbou | Alexis Masbou | Ongetta-Ricavol | Ongetta-Ricavold | 2:00.383m | +1.680s | |
| 14 | A. Sissis | Arthur Sissis | RB KTM Ajo | Red Bull KTM Ajo | 2:00.448m | +1.745s | |
| 15 | Z. Khairuddin | Zulfahmi Khairuddin | RB KTM Ajo | Red Bull KTM Ajo | 2:00.504m | +1.801s | |
| 16 | A. Tonucci | Alessandro Tonucci | LF Tascaracing | La Fonte Tascaracing | 2:00.658m | +1.955s | |
| 17 | N. Antonelli | Niccolò Antonelli | GO&FUN Gresini | GO&FUN Gresini Moto3 | 2:00.687m | +1.984s | |
| 19 | M. Ferrari | Matteo Ferrari | Ongetta-Centro | Ongetta-Centro Seta | 2:00.756m | +2.053s | |
| 20 | A. Techer | Alan Techer | CIP-Green | CIP Green Power | 2:00.760m | +2.057s | |
| 22 | Á. Márquez | Álex Márquez | Estrella Gal. | Estrella Galicia 0'0 | 2:00.897m | +2.194s | |
| 23 | J. Kornfeil | Jakub Kornfeil | Redox RW | Redox RW Racing GP | 2:01.007m | +2.304s | |
| 24 | R. Fenati | Romano Fenati | San Carlo Team | San Carlo Team Italia | 2:01.072m | +2.369s | |
| 25 | P. Öttl | Philipp Öttl | Paddock Motion | Paddock TT Motion | 2:01.161m | +2.458s | |
| 26 | E. Granado | Eric Granado | Aspar Team | CFMOTO Aspar Team | 2:01.250m | +2.547s | |
| 27 | J. Iwema | Jasper Iwema | RW Racing GP | RW Racing GP | 2:01.279m | +2.576s | |
| 28 | A. Carrasco | Ana Carrasco | Team Calvo | Team Calvo | 2:01.598m | +2.895s | |
| 29 | L. Baldassarri | Lorenzo Baldassarri | GO&FUN Gresini | GO&FUN Gresini Moto3 | 2:01.626m | +2.923s | |
| 30 | F. Bagnaia | Francesco Bagnaia | San Carlo Team | San Carlo Team Italia | 2:01.788m | +3.085s | |
| 31 | T. Finsterbusch | Toni Finsterbusch | Kiefer Racing | Kiefer Racing | 2:01.882m | +3.179s | |
| 32 | J. Guevara | Juanfran Guevara | CIP-Green | CIP Green Power | 2:01.935m | +3.232s | |
| 33 | H. Watanabe | Hyuga Watanabe | LF Tascaracing | La Fonte Tascaracing | 2:02.053m | +3.350s |
| Aragon GP | 27.09. - 29.09. | |
| Sepang | 11.10. - 13.10. | |
| Phillip Island | 18.10. - 20.10. | |
| Japan GP | 25.10. - 27.10. | |
| Valencia | 08.11. - 10.11. |