
| Pos | Name | Fahrer | Team | Team | Zeit | Zeit | |
|---|---|---|---|---|---|---|---|
| 1 | J. Folger | Jonas Folger | Aspar Team | CFMOTO Aspar Team | 1:57.603m | 1:57.603m | |
| 2 | M. Viñales | Maverick Viñales | Team Calvo | Team Calvo | 1:57.669m | +0.066s | |
| 3 | Á. Rins | Álex Rins | Estrella Gal. | Estrella Galicia 0'0 | 1:58.046m | +0.443s | |
| 4 | J. Miller | Jack Miller | Caretta RTG | Caretta Technology - RTG | 1:58.056m | +0.453s | |
| 5 | L. Salom | Luis Salom | RB KTM Ajo | Red Bull KTM Ajo | 1:58.129m | +0.526s | |
| 6 | M. Oliveira | Miguel Oliveira | Mahindra Racing | Mahindra Racing | 1:58.480m | +0.877s | |
| 7 | N. Antonelli | Niccolò Antonelli | GO&FUN Gresini | GO&FUN Gresini Moto3 | 1:58.724m | +1.121s | |
| 8 | J. Kornfeil | Jakub Kornfeil | Redox RW | Redox RW Racing GP | 1:58.799m | +1.196s | |
| 9 | D. Webb | Daniel Webb | Ambrogio Racing | Ambrogio Racing | 1:58.910m | +1.307s | |
| 10 | Á. Márquez | Álex Márquez | Estrella Gal. | Estrella Galicia 0'0 | 1:59.211m | +1.608s | |
| 11 | B. Binder | Brad Binder | Ambrogio Racing | Ambrogio Racing | 1:59.330m | +1.727s | |
| 12 | A. Techer | Alan Techer | CIP-Green | CIP Green Power | 1:59.337m | +1.734s | |
| 13 | I. Viñales | Isaac Viñales | B-O-C Seta | Bimbo-Ongetta-Centro Seta | 1:59.381m | +1.778s | |
| 14 | J. McPhee | John McPhee | Caretta RTG | Caretta Technology - RTG | 1:59.628m | +2.025s | |
| 15 | E. Granado | Eric Granado | Aspar Team | CFMOTO Aspar Team | 1:59.682m | +2.079s | |
| 16 | A. Masbou | Alexis Masbou | Ongetta-Ricavol | Ongetta-Ricavold | 1:59.700m | +2.097s | |
| 17 | A. Tonucci | Alessandro Tonucci | LF Tascaracing | La Fonte Tascaracing | 1:59.779m | +2.176s | |
| 18 | Z. Khairuddin | Zulfahmi Khairuddin | RB KTM Ajo | Red Bull KTM Ajo | 1:59.804m | +2.201s | |
| 19 | J. Iwema | Jasper Iwema | RW Racing GP | RW Racing GP | 1:59.945m | +2.342s | |
| 20 | R. Fenati | Romano Fenati | San Carlo Team | San Carlo Team Italia | 2:00.048m | +2.445s | |
| 22 | M. Ferrari | Matteo Ferrari | Ongetta-Centro | Ongetta-Centro Seta | 2:00.110m | +2.507s | |
| 23 | N. Ajo | Niklas Ajo | Avant Tecno | Avant Tecno | 2:00.161m | +2.558s | |
| 24 | P. Öttl | Philipp Öttl | Paddock Motion | Paddock TT Motion | 2:00.178m | +2.575s | |
| 25 | A. Sissis | Arthur Sissis | RB KTM Ajo | Red Bull KTM Ajo | 2:00.186m | +2.583s | |
| 26 | J. Guevara | Juanfran Guevara | CIP-Green | CIP Green Power | 2:00.324m | +2.721s | |
| 27 | L. Baldassarri | Lorenzo Baldassarri | GO&FUN Gresini | GO&FUN Gresini Moto3 | 2:00.410m | +2.807s | |
| 29 | H. Watanabe | Hyuga Watanabe | LF Tascaracing | La Fonte Tascaracing | 2:00.780m | +3.177s | |
| 31 | E. Vázquez | Efrén Vázquez | Mahindra Racing | Mahindra Racing | 2:01.216m | +3.613s | |
| 32 | F. Bagnaia | Francesco Bagnaia | San Carlo Team | San Carlo Team Italia | 2:01.322m | +3.719s | |
| 33 | A. Carrasco | Ana Carrasco | Team Calvo | Team Calvo | 2:01.768m | +4.165s | |
| 34 | T. Finsterbusch | Toni Finsterbusch | Kiefer Racing | Kiefer Racing | 2:01.931m | +4.328s |
| Aragon GP | 27.09. - 29.09. | |
| Sepang | 11.10. - 13.10. | |
| Phillip Island | 18.10. - 20.10. | |
| Japan GP | 25.10. - 27.10. | |
| Valencia | 08.11. - 10.11. |