
| Pos | Name | Fahrer | Team | Team | Zeit | Zeit | |
|---|---|---|---|---|---|---|---|
| 1 | L. Salom | Luis Salom | RB KTM Ajo | Red Bull KTM Ajo | 1:59.606m | 1:59.606m | |
| 2 | M. Viñales | Maverick Viñales | Team Calvo | Team Calvo | 1:59.631m | +0.025s | |
| 3 | J. Folger | Jonas Folger | Aspar Team | CFMOTO Aspar Team | 2:00.101m | +0.495s | |
| 4 | D. Webb | Daniel Webb | Ambrogio Racing | Ambrogio Racing | 2:00.361m | +0.755s | |
| 5 | J. Miller | Jack Miller | Caretta RTG | Caretta Technology - RTG | 2:00.395m | +0.789s | |
| 6 | M. Oliveira | Miguel Oliveira | Mahindra Racing | Mahindra Racing | 2:00.618m | +1.012s | |
| 7 | R. Fenati | Romano Fenati | San Carlo Team | San Carlo Team Italia | 2:00.772m | +1.166s | |
| 8 | N. Antonelli | Niccolò Antonelli | GO&FUN Gresini | GO&FUN Gresini Moto3 | 2:01.080m | +1.474s | |
| 9 | J. McPhee | John McPhee | Caretta RTG | Caretta Technology - RTG | 2:01.121m | +1.515s | |
| 10 | Á. Rins | Álex Rins | Estrella Gal. | Estrella Galicia 0'0 | 2:01.133m | +1.527s | |
| 11 | A. Masbou | Alexis Masbou | Ongetta-Ricavol | Ongetta-Ricavold | 2:01.279m | +1.673s | |
| 12 | M. Ferrari | Matteo Ferrari | Ongetta-Centro | Ongetta-Centro Seta | 2:01.285m | +1.679s | |
| 13 | Z. Khairuddin | Zulfahmi Khairuddin | RB KTM Ajo | Red Bull KTM Ajo | 2:01.382m | +1.776s | |
| 14 | B. Binder | Brad Binder | Ambrogio Racing | Ambrogio Racing | 2:01.407m | +1.801s | |
| 15 | A. Techer | Alan Techer | CIP-Green | CIP Green Power | 2:01.450m | +1.844s | |
| 16 | A. Tonucci | Alessandro Tonucci | LF Tascaracing | La Fonte Tascaracing | 2:01.458m | +1.852s | |
| 17 | N. Ajo | Niklas Ajo | Avant Tecno | Avant Tecno | 2:01.508m | +1.902s | |
| 18 | I. Viñales | Isaac Viñales | B-O-C Seta | Bimbo-Ongetta-Centro Seta | 2:01.514m | +1.908s | |
| 19 | Á. Márquez | Álex Márquez | Estrella Gal. | Estrella Galicia 0'0 | 2:01.792m | +2.186s | |
| 20 | J. Iwema | Jasper Iwema | RW Racing GP | RW Racing GP | 2:01.803m | +2.197s | |
| 21 | A. Sissis | Arthur Sissis | RB KTM Ajo | Red Bull KTM Ajo | 2:01.899m | +2.293s | |
| 23 | L. Baldassarri | Lorenzo Baldassarri | GO&FUN Gresini | GO&FUN Gresini Moto3 | 2:02.001m | +2.395s | |
| 25 | P. Öttl | Philipp Öttl | Paddock Motion | Paddock TT Motion | 2:02.464m | +2.858s | |
| 26 | J. Guevara | Juanfran Guevara | CIP-Green | CIP Green Power | 2:02.559m | +2.953s | |
| 27 | E. Granado | Eric Granado | Aspar Team | CFMOTO Aspar Team | 2:02.726m | +3.120s | |
| 29 | E. Vázquez | Efrén Vázquez | Mahindra Racing | Mahindra Racing | 2:02.822m | +3.216s | |
| 30 | F. Bagnaia | Francesco Bagnaia | San Carlo Team | San Carlo Team Italia | 2:02.918m | +3.312s | |
| 31 | T. Finsterbusch | Toni Finsterbusch | Kiefer Racing | Kiefer Racing | 2:03.387m | +3.781s | |
| 32 | A. Carrasco | Ana Carrasco | Team Calvo | Team Calvo | 2:03.424m | +3.818s | |
| 33 | H. Watanabe | Hyuga Watanabe | LF Tascaracing | La Fonte Tascaracing | 2:03.909m | +4.303s | |
| 34 | J. Kornfeil | Jakub Kornfeil | Redox RW | Redox RW Racing GP | DNF | DNF |
| Aragon GP | 27.09. - 29.09. | |
| Sepang | 11.10. - 13.10. | |
| Phillip Island | 18.10. - 20.10. | |
| Japan GP | 25.10. - 27.10. | |
| Valencia | 08.11. - 10.11. |