
| Pos | Name | Fahrer | Team | Team | Zeit | Zeit | |
|---|---|---|---|---|---|---|---|
| 1 | J. Folger | Jonas Folger | Aspar Team | CFMOTO Aspar Team | 2:09.450m | 2:09.450m | |
| 2 | M. Viñales | Maverick Viñales | Team Calvo | Team Calvo | 2:09.663m | +0.213s | |
| 4 | Á. Rins | Álex Rins | Estrella Gal. | Estrella Galicia 0'0 | 2:10.038m | +0.588s | |
| 5 | J. Miller | Jack Miller | Caretta RTG | Caretta Technology - RTG | 2:10.156m | +0.706s | |
| 6 | R. Fenati | Romano Fenati | San Carlo Team | San Carlo Team Italia | 2:10.162m | +0.712s | |
| 7 | M. Oliveira | Miguel Oliveira | Mahindra Racing | Mahindra Racing | 2:10.373m | +0.923s | |
| 8 | L. Salom | Luis Salom | RB KTM Ajo | Red Bull KTM Ajo | 2:10.424m | +0.974s | |
| 9 | I. Viñales | Isaac Viñales | B-O-C Seta | Bimbo-Ongetta-Centro Seta | 2:10.475m | +1.025s | |
| 10 | Z. Khairuddin | Zulfahmi Khairuddin | RB KTM Ajo | Red Bull KTM Ajo | 2:10.642m | +1.192s | |
| 11 | N. Ajo | Niklas Ajo | Avant Tecno | Avant Tecno | 2:10.769m | +1.319s | |
| 12 | A. Masbou | Alexis Masbou | Ongetta-Ricavol | Ongetta-Ricavold | 2:10.920m | +1.470s | |
| 13 | Á. Márquez | Álex Márquez | Estrella Gal. | Estrella Galicia 0'0 | 2:11.441m | +1.991s | |
| 15 | A. Sissis | Arthur Sissis | RB KTM Ajo | Red Bull KTM Ajo | 2:11.631m | +2.181s | |
| 16 | N. Antonelli | Niccolò Antonelli | GO&FUN Gresini | GO&FUN Gresini Moto3 | 2:11.708m | +2.258s | |
| 18 | D. Webb | Daniel Webb | Ambrogio Racing | Ambrogio Racing | 2:12.090m | +2.640s | |
| 19 | M. Ferrari | Matteo Ferrari | Ongetta-Centro | Ongetta-Centro Seta | 2:12.190m | +2.740s | |
| 20 | B. Binder | Brad Binder | Ambrogio Racing | Ambrogio Racing | 2:12.226m | +2.776s | |
| 21 | L. Baldassarri | Lorenzo Baldassarri | GO&FUN Gresini | GO&FUN Gresini Moto3 | 2:12.355m | +2.905s | |
| 22 | E. Granado | Eric Granado | Aspar Team | CFMOTO Aspar Team | 2:12.480m | +3.030s | |
| 23 | A. Carrasco | Ana Carrasco | Team Calvo | Team Calvo | 2:12.806m | +3.356s | |
| 24 | A. Techer | Alan Techer | CIP-Green | CIP Green Power | 2:13.044m | +3.594s | |
| 25 | H. Watanabe | Hyuga Watanabe | LF Tascaracing | La Fonte Tascaracing | 2:13.102m | +3.652s | |
| 26 | A. Tonucci | Alessandro Tonucci | LF Tascaracing | La Fonte Tascaracing | 2:13.447m | +3.997s | |
| 27 | J. McPhee | John McPhee | Caretta RTG | Caretta Technology - RTG | 2:13.510m | +4.060s | |
| 28 | J. Guevara | Juanfran Guevara | CIP-Green | CIP Green Power | 2:13.562m | +4.112s | |
| 29 | F. Bagnaia | Francesco Bagnaia | San Carlo Team | San Carlo Team Italia | 2:14.340m | +4.890s | |
| 30 | J. Iwema | Jasper Iwema | RW Racing GP | RW Racing GP | 2:14.488m | +5.038s | |
| 31 | P. Öttl | Philipp Öttl | Paddock Motion | Paddock TT Motion | 2:14.600m | +5.150s | |
| 32 | T. Finsterbusch | Toni Finsterbusch | Kiefer Racing | Kiefer Racing | DNF | DNF | |
| 33 | J. Kornfeil | Jakub Kornfeil | Redox RW | Redox RW Racing GP | DNF | DNF | |
| 34 | E. Vázquez | Efrén Vázquez | Mahindra Racing | Mahindra Racing | DNF | DNF |
| Aragon GP | 27.09. - 29.09. | |
| Sepang | 11.10. - 13.10. | |
| Phillip Island | 18.10. - 20.10. | |
| Japan GP | 25.10. - 27.10. | |
| Valencia | 08.11. - 10.11. |