
| Pos | Name | Fahrer | Team | Team | Zeit | Zeit | |
|---|---|---|---|---|---|---|---|
| 1 | I. Viñales | Isaac Viñales | Team Calvo | Team Calvo | 1:43.998m | 1:43.998m | |
| 2 | E. Vázquez | Efrén Vázquez | Peugeot MC Saxo | Peugeot MC Saxoprint | 1:44.122m | +0.124s | |
| 3 | Á. Márquez | Álex Márquez | Estrella Gal. | Estrella Galicia 0'0 | 1:44.391m | +0.393s | |
| 4 | Á. Rins | Álex Rins | Estrella Gal. | Estrella Galicia 0'0 | 1:44.417m | +0.419s | |
| 5 | R. Fenati | Romano Fenati | Sky Racing Team | Sky Racing Team VR46 | 1:44.474m | +0.476s | |
| 6 | J. Miller | Jack Miller | RB KTM Ajo | Red Bull KTM Ajo | 1:44.589m | +0.591s | |
| 7 | N. Antonelli | Niccolò Antonelli | Junior GO&FUN | Junior Team GO&FUN Moto3 | 1:44.768m | +0.770s | |
| 8 | A. Tonucci | Alessandro Tonucci | CIP-Green | CIP Green Power | 1:45.001m | +1.003s | |
| 9 | N. Ajo | Niklas Ajo | Avant Tecno | Avant Tecno | 1:45.149m | +1.151s | |
| 10 | H. Azmi | Hafiq Azmi | SIC-AJO | SIC-AJO | 1:45.164m | +1.166s | |
| 11 | L. Loi | Livio Loi | Marc VDS Racing | Marc VDS Racing Team | 1:45.176m | +1.178s | |
| 12 | M. Oliveira | Miguel Oliveira | Mahindra Racing | Mahindra Racing | 1:45.200m | +1.202s | |
| 13 | A. Masbou | Alexis Masbou | Snipers Team | Rivacold Snipers Team | 1:45.230m | +1.232s | |
| 14 | B. Binder | Brad Binder | Ambrogio Racing | Ambrogio Racing | 1:45.254m | +1.256s | |
| 15 | E. Bastianini | Enea Bastianini | Junior GO&FUN | Junior Team GO&FUN Moto3 | 1:45.284m | +1.286s | |
| 16 | J. McPhee | John McPhee | Peugeot MC Saxo | Peugeot MC Saxoprint | 1:45.436m | +1.438s | |
| 17 | Z. Khairuddin | Zulfahmi Khairuddin | Ongnetta-AirA | Ongnetta-AirAsia | 1:45.528m | +1.530s | |
| 18 | P. Öttl | Philipp Öttl | Interwetten Pad | Interwetten Paddock Moto3 | 1:45.582m | +1.584s | |
| 19 | F. Bagnaia | Francesco Bagnaia | Sky Racing Team | Sky Racing Team VR46 | 1:45.678m | +1.680s | |
| 20 | D. Kent | Danny Kent | RB Husqvarna | Red Bull Husqvarna Ajo | 1:45.700m | +1.702s | |
| 21 | K. Hanika | Karel Hanika | RB KTM Ajo | Red Bull KTM Ajo | 1:45.792m | +1.794s | |
| 22 | J. Guevara | Juanfran Guevara | Aspar Team | CFMOTO Aspar Team | 1:45.972m | +1.974s | |
| 23 | M. Ferrari | Matteo Ferrari | San Carlo Team | San Carlo Team Italia | 1:45.996m | +1.998s | |
| 24 | J. Kornfeil | Jakub Kornfeil | Team Calvo | Team Calvo | 1:46.046m | +2.048s | |
| 25 | A. Sissis | Arthur Sissis | Mahindra Racing | Mahindra Racing | 1:46.100m | +2.102s | |
| 26 | L. Grünwald | Luca Grünwald | Kiefer Racing | Kiefer Racing | 1:46.424m | +2.426s | |
| 27 | B. Schouten | Bryan Schouten | CIP-Green | CIP Green Power | 1:46.504m | +2.506s | |
| 28 | A. Carrasco | Ana Carrasco | RW Racing GP | RW Racing GP | 1:46.693m | +2.695s | |
| 29 | S. Deroue | Scott Deroue | RW Racing GP | RW Racing GP | 1:47.427m | +3.429s | |
| 30 | J. Danilo | Jules Danilo | Ambrogio Racing | Ambrogio Racing | 1:47.498m | +3.500s | |
| 31 | E. Granado | Eric Granado | Team Calvo | Team Calvo | 1:47.587m | +3.589s | |
| 32 | M. Rinaldi | Michael Ruben Rinaldi | San Carlo Team | San Carlo Team Italia | 1:48.002m | +4.004s | |
| 33 | G. Ramos | Gabriel Ramos | Kiefer Racing | Kiefer Racing | 1:49.259m | +5.261s |
| Aragon GP | 26.09. - 28.09. | |
| Japan GP | 10.10. - 12.10. | |
| Phillip Island | 17.10. - 19.10. | |
| Sepang | 24.10. - 26.10. | |
| Valencia | 07.11. - 09.11. |