
| Pos | Name | Fahrer | Team | Team | Zeit | Zeit | |
|---|---|---|---|---|---|---|---|
| 1 | M. Viñales | Maverick Viñales | Team Calvo | Team Calvo | 1:47.999m | 1:47.999m | |
| 2 | J. Folger | Jonas Folger | Aspar Team | CFMOTO Aspar Team | 1:48.217m | +0.218s | |
| 3 | Á. Rins | Álex Rins | Estrella Gal. | Estrella Galicia 0'0 | 1:48.275m | +0.276s | |
| 4 | L. Salom | Luis Salom | RB KTM Ajo | Red Bull KTM Ajo | 1:48.696m | +0.697s | |
| 5 | Á. Márquez | Álex Márquez | Estrella Gal. | Estrella Galicia 0'0 | 1:48.811m | +0.812s | |
| 6 | J. Miller | Jack Miller | Caretta RTG | Caretta Technology - RTG | 1:48.966m | +0.967s | |
| 7 | J. Kornfeil | Jakub Kornfeil | Redox RW | Redox RW Racing GP | 1:49.383m | +1.384s | |
| 8 | E. Vázquez | Efrén Vázquez | Mahindra Racing | Mahindra Racing | 1:49.393m | +1.394s | |
| 9 | N. Ajo | Niklas Ajo | Avant Tecno | Avant Tecno | 1:49.527m | +1.528s | |
| 10 | J. McPhee | John McPhee | Caretta RTG | Caretta Technology - RTG | 1:49.539m | +1.540s | |
| 11 | M. Oliveira | Miguel Oliveira | Mahindra Racing | Mahindra Racing | 1:49.554m | +1.555s | |
| 12 | D. Webb | Daniel Webb | Ambrogio Racing | Ambrogio Racing | 1:49.579m | +1.580s | |
| 13 | N. Antonelli | Niccolò Antonelli | GO&FUN Gresini | GO&FUN Gresini Moto3 | 1:49.707m | +1.708s | |
| 14 | A. Sissis | Arthur Sissis | RB KTM Ajo | Red Bull KTM Ajo | 1:49.841m | +1.842s | |
| 16 | B. Binder | Brad Binder | Ambrogio Racing | Ambrogio Racing | 1:49.986m | +1.987s | |
| 17 | A. Masbou | Alexis Masbou | Ongetta-Ricavol | Ongetta-Ricavold | 1:50.081m | +2.082s | |
| 18 | Z. Khairuddin | Zulfahmi Khairuddin | RB KTM Ajo | Red Bull KTM Ajo | 1:50.210m | +2.211s | |
| 19 | A. Techer | Alan Techer | CIP-Green | CIP Green Power | 1:50.253m | +2.254s | |
| 21 | J. Iwema | Jasper Iwema | RW Racing GP | RW Racing GP | 1:50.371m | +2.372s | |
| 22 | E. Granado | Eric Granado | Aspar Team | CFMOTO Aspar Team | 1:50.379m | +2.380s | |
| 23 | I. Viñales | Isaac Viñales | B-O-C Seta | Bimbo-Ongetta-Centro Seta | 1:50.436m | +2.437s | |
| 24 | F. Alt | Florian Alt | Kiefer Racing | Kiefer Racing | 1:50.458m | +2.459s | |
| 25 | A. Carrasco | Ana Carrasco | Team Calvo | Team Calvo | 1:50.718m | +2.719s | |
| 26 | M. Ferrari | Matteo Ferrari | Ongetta-Centro | Ongetta-Centro Seta | 1:50.735m | +2.736s | |
| 27 | J. Guevara | Juanfran Guevara | CIP-Green | CIP Green Power | 1:50.783m | +2.784s | |
| 28 | R. Fenati | Romano Fenati | San Carlo Team | San Carlo Team Italia | 1:50.827m | +2.828s | |
| 29 | A. Tonucci | Alessandro Tonucci | LF Tascaracing | La Fonte Tascaracing | 1:50.983m | +2.984s | |
| 30 | H. Watanabe | Hyuga Watanabe | LF Tascaracing | La Fonte Tascaracing | 1:50.989m | +2.990s | |
| 31 | F. Bagnaia | Francesco Bagnaia | San Carlo Team | San Carlo Team Italia | 1:51.268m | +3.269s | |
| 32 | P. Öttl | Philipp Öttl | Paddock Motion | Paddock TT Motion | 1:51.334m | +3.335s | |
| 33 | L. Baldassarri | Lorenzo Baldassarri | GO&FUN Gresini | GO&FUN Gresini Moto3 | 1:52.009m | +4.010s | |
| 35 | T. Finsterbusch | Toni Finsterbusch | Kiefer Racing | Kiefer Racing | 1:55.117m | +7.118s |
| Aragon GP | 27.09. - 29.09. | |
| Sepang | 11.10. - 13.10. | |
| Phillip Island | 18.10. - 20.10. | |
| Japan GP | 25.10. - 27.10. | |
| Valencia | 08.11. - 10.11. |