
| Pos | Name | Fahrer | Team | Team | Zeit | Zeit | |
|---|---|---|---|---|---|---|---|
| 1 | L. Salom | Luis Salom | RB KTM Ajo | Red Bull KTM Ajo | 1:38.332m | 1:38.332m | |
| 2 | J. Folger | Jonas Folger | Aspar Team | CFMOTO Aspar Team | 1:38.377m | +0.045s | |
| 3 | Z. Khairuddin | Zulfahmi Khairuddin | RB KTM Ajo | Red Bull KTM Ajo | 1:38.538m | +0.206s | |
| 4 | I. Viñales | Isaac Viñales | B-O-C Seta | Bimbo-Ongetta-Centro Seta | 1:38.571m | +0.239s | |
| 5 | N. Antonelli | Niccolò Antonelli | GO&FUN Gresini | GO&FUN Gresini Moto3 | 1:38.656m | +0.324s | |
| 6 | M. Viñales | Maverick Viñales | Team Calvo | Team Calvo | 1:38.712m | +0.380s | |
| 7 | Á. Rins | Álex Rins | Estrella Gal. | Estrella Galicia 0'0 | 1:38.932m | +0.600s | |
| 8 | J. Miller | Jack Miller | Caretta RTG | Caretta Technology - RTG | 1:38.985m | +0.653s | |
| 9 | R. Fenati | Romano Fenati | San Carlo Team | San Carlo Team Italia | 1:38.991m | +0.659s | |
| 10 | Á. Márquez | Álex Márquez | Estrella Gal. | Estrella Galicia 0'0 | 1:39.030m | +0.698s | |
| 11 | M. Oliveira | Miguel Oliveira | Mahindra Racing | Mahindra Racing | 1:39.086m | +0.754s | |
| 12 | L. Baldassarri | Lorenzo Baldassarri | GO&FUN Gresini | GO&FUN Gresini Moto3 | 1:39.228m | +0.896s | |
| 13 | E. Vázquez | Efrén Vázquez | Mahindra Racing | Mahindra Racing | 1:39.238m | +0.906s | |
| 14 | N. Ajo | Niklas Ajo | Avant Tecno | Avant Tecno | 1:39.256m | +0.924s | |
| 15 | A. Masbou | Alexis Masbou | Ongetta-Ricavol | Ongetta-Ricavold | 1:39.343m | +1.011s | |
| 16 | J. McPhee | John McPhee | Caretta RTG | Caretta Technology - RTG | 1:39.493m | +1.161s | |
| 17 | B. Binder | Brad Binder | Ambrogio Racing | Ambrogio Racing | 1:39.497m | +1.165s | |
| 18 | P. Öttl | Philipp Öttl | Paddock Motion | Paddock TT Motion | 1:39.536m | +1.204s | |
| 19 | J. Iwema | Jasper Iwema | RW Racing GP | RW Racing GP | 1:39.537m | +1.205s | |
| 20 | A. Techer | Alan Techer | CIP-Green | CIP Green Power | 1:39.713m | +1.381s | |
| 21 | J. Kornfeil | Jakub Kornfeil | Redox RW | Redox RW Racing GP | 1:39.749m | +1.417s | |
| 22 | H. Watanabe | Hyuga Watanabe | LF Tascaracing | La Fonte Tascaracing | 1:39.845m | +1.513s | |
| 23 | A. Carrasco | Ana Carrasco | Team Calvo | Team Calvo | 1:39.925m | +1.593s | |
| 24 | A. Sissis | Arthur Sissis | RB KTM Ajo | Red Bull KTM Ajo | 1:39.937m | +1.605s | |
| 25 | J. Guevara | Juanfran Guevara | CIP-Green | CIP Green Power | 1:40.123m | +1.791s | |
| 26 | Kiefer Racing | Kiefer Racing | 1:40.201m | +1.869s | |||
| 27 | E. Granado | Eric Granado | Aspar Team | CFMOTO Aspar Team | 1:40.357m | +2.025s | |
| 28 | Ambrogio Racing | Ambrogio Racing | 1:40.403m | +2.071s | |||
| 29 | F. Bagnaia | Francesco Bagnaia | San Carlo Team | San Carlo Team Italia | 1:40.531m | +2.199s | |
| 30 | M. Ferrari | Matteo Ferrari | Ongetta-Centro | Ongetta-Centro Seta | 1:40.697m | +2.365s | |
| 31 | T. Finsterbusch | Toni Finsterbusch | Kiefer Racing | Kiefer Racing | 1:40.898m | +2.566s | |
| 32 | L. Loi | Livio Loi | Marc VDS Racing | Marc VDS Racing Team | 1:41.015m | +2.683s | |
| 33 | LF Tascaracing | La Fonte Tascaracing | 1:41.550m | +3.218s | |||
| 34 | L. Kavney | Lachlan Kavney | Bullet Racing | Bullet Racing | DNF | DNF |
| Aragon GP | 27.09. - 29.09. | |
| Sepang | 11.10. - 13.10. | |
| Phillip Island | 18.10. - 20.10. | |
| Japan GP | 25.10. - 27.10. | |
| Valencia | 08.11. - 10.11. |