
| Pos | Name | Fahrer | Team | Team | Zeit | Zeit | |
|---|---|---|---|---|---|---|---|
| 1 | M. Viñales | Maverick Viñales | Blusens Avintia | Blusens Avintia | 2:00.430m | 2:00.430m | |
| 2 | D. Kent | Danny Kent | Red Bull Ajo | Red Bull Ajo Motorsport | 2:00.563m | +0.133s | |
| 3 | S. Cortese | Sandro Cortese | Red Bull Ajo | Red Bull Ajo Motorsport | 2:00.635m | +0.205s | |
| 4 | L. Salom | Luis Salom | RW Racing GP | RW Racing GP | 2:00.638m | +0.208s | |
| 5 | N. Antonelli | Niccolò Antonelli | San Carlo Gre. | San Carlo Gresini Moto3 | 2:00.745m | +0.315s | |
| 6 | R. Fenati | Romano Fenati | 3570-MTA | 3570-MTA | 2:00.755m | +0.325s | |
| 7 | A. Moncayo | Alberto Moncayo | Bankia Aspar | Bankia Aspar Team | 2:00.947m | +0.517s | |
| 8 | L. Rossi | Louis Rossi | Team Germany | Racing Team Germany | 2:00.950m | +0.520s | |
| 9 | J. Kornfeil | Jakub Kornfeil | Redox-Ongetta-C | Redox-Ongetta-Centro Seta | 2:01.006m | +0.576s | |
| 10 | J. Folger | Jonas Folger | IodaRacing | IodaRacing Project | 2:01.365m | +0.935s | |
| 11 | M. Oliveira | Miguel Oliveira | Estrella Gal. | Estrella Galicia 0'0 | 2:01.392m | +0.962s | |
| 12 | A. Masbou | Alexis Masbou | Elba-Caretta | Elba-Caretta Technology | 2:01.392m | +0.962s | |
| 13 | H. Faubel | Hector Faubel | Bankia Aspar | Bankia Aspar Team | 2:01.662m | +1.232s | |
| 14 | E. Vázquez | Efrén Vázquez | JHK T-Shirt | JHK T-Shirt Laglisse | 2:01.699m | +1.269s | |
| 15 | B. Binder | Brad Binder | RW Racing GP | RW Racing GP | 2:01.757m | +1.327s | |
| 16 | Z. Khairuddin | Zulfahmi Khairuddin | Airasia-Sic-Ajo | Airasia-Sic-Ajo | 2:01.766m | +1.336s | |
| 18 | N. Ajo | Niklas Ajo | TT Motion Ev. | TT Motion Events Racing | 2:01.850m | +1.420s | |
| 19 | D. Webb | Daniel Webb | Mahindra Racing | Mahindra Racing | 2:01.887m | +1.457s | |
| 21 | Á. Rins | Álex Rins | Estrella Gal. | Estrella Galicia 0'0 | 2:01.965m | +1.535s | |
| 22 | A. Techer | Alan Techer | Technomag | Technomag-CIP-TSR | 2:02.076m | +1.646s | |
| 23 | A. Tonucci | Alessandro Tonucci | 3570-MTA | 3570-MTA | 2:02.177m | +1.747s | |
| 24 | A. Martin | Adrian Martin | JHK T-Shirt | JHK T-Shirt Laglisse | 2:02.332m | +1.902s | |
| 25 | J. Miller | Jack Miller | Elba-Caretta | Elba-Caretta Technology | 2:02.482m | +2.052s | |
| 26 | A. Sissis | Arthur Sissis | Red Bull Ajo | Red Bull Ajo Motorsport | 2:02.831m | +2.401s | |
| 27 | L. Morciano | Luigi Morciano | Ioda Team Itali | Ioda Team Italia | 2:02.864m | +2.434s | |
| 29 | S. Grotzki Giorgi | Simone Grotzki Giorgi | Ambrogio Next | Ambrogio Next Racing | 2:02.971m | +2.541s | |
| 30 | I. Viñales | Isaac Viñales | Ongetta-Centro | Ongetta-Centro Seta | 2:03.045m | +2.615s | |
| 31 | T. Finsterbusch | Toni Finsterbusch | MZ Racing | Cresto Guide MZ Racing | 2:03.119m | +2.689s | |
| 32 | J. Iwema | Jasper Iwema | Moto FGR | Moto FGR | 2:03.310m | +2.880s | |
| 33 | G. Pedone | Giulian Pedone | Ambrogio Next | Ambrogio Next Racing | 2:03.462m | +3.032s | |
| 34 | I. Moreno | Ivan Moreno | Andalucia JHK | Andalucia JHK Laglisse | 2:04.991m | +4.561s | |
| 35 | K. Fuji | Kenta Fuji | Technomag | Technomag-CIP-TSR | DNF | DNF |
| Aragon GP | 28.09. - 30.09. | |
| Japan GP | 12.10. - 14.10. | |
| Sepang | 19.10. - 21.10. | |
| Phillip Island | 26.10. - 28.10. | |
| Valencia | 09.11. - 11.11. |